YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110762000
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKNGTGPVI RMSSTATHAA GGVECCFCRC CTCIHLEFLK TLPGVLKLCE TIISGLIQSL  60
   61 LINYGLRYST TIGSAFEGSL TTSSACFLTS AVLLACYIVS EKSYRLIKSS LFELMFNSLA 120
  121 SFLYLSSASY LAFSTKIFLL PEYYIKPGFD VYPAMTAAYI MSGFVGILHG ADAYFCYTHY 180
  181 RTGR

Type	Start	End	Confidence
Cytoplasmic	1	43	0.74
Transmembrane Helix	44	66	0.72
Non-Cytoplasmic	67	77	0.82
Transmembrane Helix	78	99	0.90
Cytoplasmic	100	113	0.86
Transmembrane Helix	114	134	0.87
Non-Cytoplasmic	135	154	0.83
Transmembrane Helix	155	177	0.89
Cytoplasmic	178	184	0.90