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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110755551
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIHGDTRLT AHTYWNEHEL SKIKSVIANA TYNAAILTLP DYDMNGSLVV GEGFKGCILQ  60
   61 GPGILFNDTM NNGAVFGPCP AENKGCGTSG LNGGVGSSVI TTMDFCYLEP CMMHGKCVSR 120
  121 QDRYECHCYA RYSGNNCQID NGPPCLSGPC RNGGTCNEDI KGDFSCACKP GFTGVHCESQ 180
  181 LGVRLCEQSP CRNDGVCLAV TETEYKCDCQ PGWSGKNCET NINECSPNPC RHGGVCIDGI 240
  241 NNYTCICDRT GYEGANCEVD IDECLANPCL NNGVCYDNYG GYICHCPNGF EGQNCELNLN 300
  301 ECLSNPCKHG GDCVDDVGSY HCNCPSGYAG RHCELRSLCE NAVNYCANNP CSNGGTCTSN 360
  361 KDGFNCTCPP EWKGTTCLSS ASDWCSACYN GGSCLETRFG IMCQCPRFWT GPQCKEPITC 420
  421 RDLPCKQASA CHDYPGGYYC TCEAGWTGPE CSIDVDECSS DPCRNGGICI DQQNSYYCQC 480
  481 LPGYTGKNCQ INVDECLSQP CQNGGTCIDR INGYICNCTK DFMDENCERE YNACAANPCH 540
  541 NNGNCTLIPR SRREFVCECP RGFEGKTCDV NVDDCIDVIC PDGQVCVDGI AGYECKCREG 600
  601 YRDPNCTHIV DHCASVSCNS GTCVDLGDQG YECKCKDGFQ GKFCDEDVNE CNVEGSSLCN 660
  661 NGICVNTDGS YNCFCRPGFS GDHCDIDIDE CLCGPCKNNA TCIDGINTFE CQCPLGYSGK 720
  721 TCDVDVNECE SDPCLNGATC VDEIASYMCI CSPGFRGLNC EINIDDCEPL PCLNHGQCID 780
  781 GINNYTCDCS NTGFEGAHCE KNIDDCRSGP CVNGAHCIDD IKNYKCQCYA GYTGKNCEVD 840
  841 INECESSPCQ YNGTCLERSK IELYKSDALT LPSIFNQEFS YANASGYECL CVQGVTGKNC 900
  901 EVNINECDSN PCQAGTCVDR IGGYTCECDE GYEGDHCQHD IDECKRYSPC EHGVCTDGRA 960
  961 DYTCTCEPEY GGKNCSVELI GCQGNACQNG GTCWPYLVDE TIHKFNCTCP NGYHGEICDY1020
 1021 VTTMSLNGSS YVLVNTTRDE GYDIQFRFRT TLPNGLLAIG KGSTFYILEL VNGKLNLHSS1080
 1081 LLNKWEGVFI GSGLNDSTWQ KVFVAINATH LVLSANEEQT IYPISLNEGS NSNHTSFPMT1140
 1141 YVGGTTNYLR RLTHGPSFFI GCTEDVVING EWVYSGTLLK TVYMEDIEPG CPREAQCSPN1200
 1201 RCKNGGDCTD RWRDFSCKCE RPYLGHTCQY NMTAATFGYE NITNGYVTVK VSDMARRAVR1260
 1261 SIVDISMFIR TRQDRGDIFY LGTENPNPQT DLKPQEKTYI AAQLEGGELL VRIQFNGTEA1320
 1321 YTVGGVKLND GNNHLIQVIR NVTLVQVKIN GTEYFRKTIS ASGQLNVTVL YLGGLPQASR1380
 1381 YIRQVDNRQI EVSQAPQVNF KGIIQDVQIS NGVETMVVEF FPLKANDIPT PIQFGNVTFD1440
 1441 YEKILKGVIS DNVCVSNPCN HNGTCHITWN DFWCQCPRGY TGKTCQEMEF CQLQDCPAGS1500
 1501 RCQNLDDGYE CIANATFNGV TTSFTYVYNQ VEEKNVTDST IDTIQITYRS NTGGTLMHIS1560
 1561 PRIGDQHFTV SVYKDKITVS WRLDLQNEGI LSFGKTETDG NWTSIVLRLN NNSMECGYAN1620
 1621 SNDEYASHVS PNFSFPLWYD LLVTGTVTLG GLGSILSNKH SYITIGSNKQ SLENKSGINE1680
 1681 NSIDFTERTT LTTASPPYNI MSGEAFKGCL GEVRIGSMLL HYFTYEEVYQ NANFTPLEYL1740
 1741 ALQENNSTYH DSIGCQLCFD SDCKNNGFCL DKANSYICEC PAGYTEDDCS FNIDECINNK1800
 1801 CENGATCIDG IANYTCICNN GWQGWLCDSD INECVTLSPC QHDGVCVNLP GYFRCECPDQ1860
 1861 FTGERCEIFR LITCENQPCK NGGSCTDIIN PQTGDNFTCT CTTGYEGSIC DVPYCIGQKC1920
 1921 QNGGKCDFLY QTPRCTCLPG YSGLYCEINI DDCAPDAEGN VPCKNDGKCY DGVNSFTCDC1980
 1981 NDTGYTGPDC LFDIDECGIP ITDCGQGRCK NLPGTYQCIC DPGYCGYNCG MIDPCKPDYC2040
 2041 QNGGTCKCGD NGGYRCECTP HYTGQNCTET ENFLGSQALD IAVIVGPIVG CLFIIAAGSL2100
 2101 VALFMMARKK RATRGTYSPS AQEFSNPRVE MDNVMKPPPE ERLI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle