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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110755343
Protein type: Transmembrane
Type Confidence: 0.56
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRKKSADMSA LNAGPCRPGI ILCLAAVLLA PHSDSAPVYD QDTTQVAEYD GATAGCYYNY  60
   61 QHYKEGDRII TNEPCLNCTC HNRMLMCYLR VCPFTKAIGQ DCTVEKRPDQ CCPVITCPEV 120
  121 PVQLLTSTTS APSTSGSTAV GFHDNYGCNV DDRFYADGAQ LPIDPQNPCE LCYCIRNRTT 180
  181 CVMQECTLRV AGCRPVYQPG VCCPVKYNCG ESRMKGFRKY DEEQATTVEP TPGLIMTTTM 240
  241 APGATTSQCY HEGKVYEGGE LIYSTQPCQH CYCFHGDIAC AVQDCGTPMK THGKNCTALP 300
  301 PPEGECCPTT YECEDDGEVV TLPRGEEHGY STTEGHVQET TEKQLVETTE ESFPGSDNVI 360
  361 PQDHEAASTE LPVETASEEP KKEEESTRKE IGVTEEYSTE GTVTPPEQVT EEKEGKGEEM 420
  421 ATTPAEETTR KEGEEQQVVT EQAVVPEEAH TVKGEVEKGE QPELPPASGE KEEEAKPTEE 480
  481 ESVSGKGEEE EERPSVTSES SLAEEEQPEK STRLPELPSE EKGTSSIPEA TTEKGLSEEQ 540
  541 VTEAQVKETE GPVIASEQEQ KGTTPGEEKG AEEEAATPET EVVTEKSAPE VPSTEQVPVR 600
  601 EEEERKEKPM LEVSTEQQPT EASVVPTEHG VEQEATTEAA AETEQPMVHE HKTGVAPKKE 660
  661 DAIPPEIPPD SIPPEVSEKP STDEKAEEEE EEEEETPVIP EQGPTGISIT ERVPESKAED 720
  721 KEAVTEMQVT EMQVTEGYVD MKPPEFHVPS NLVTEAPLAK EPSSTYLPAE HETSAPRQEQ 780
  781 TVPIEQEGTT MGAPLPGEEG STTEPQQKEE VSTESDRIPE EEKEATEAAS KGTEQPSVEA 840
  841 STTQQPSQEQ TEQPGLHEEQ STETSSSEVS PTKETSKEEL PMKGLTIEES EEVTSSEEVN 900
  901 DSSEEVTKEK PIETKKEPEE HSETPTQPPL EEHPTERAEE ETVGTERVST ESAPIAPSTE 960
  961 APSGEERSTE VIPEEKVVTE QEERVTVAPE EGAPSERPEV GSEAAEEQVT EKPVAGKEEA1020
 1021 EVTAKPAEGE EINTVPVVNE EGEASEKPLE EVPKEGTPLE TESTPATQEA TEEATEGSLT1080
 1081 IEVHPTVASM EGKTEMPESS EQPVVVEQTE APITKETTER VEEERKTEEP AREEQTEGPA1140
 1141 AASPSTEETV TEAGLEKEGT QAPVEEHTKS PISERKEDEE SVKGAEEPSE KEEGVQKPPL1200
 1201 EEEKTTEKPA GEEEMTAVPE EAEVTGKPIE EEKLPEEQPT EEQRPSEEPI KEEEEKSVEG1260
 1261 KPTEEPVEGE KVTEEPSIEE EKHAEEEKPT ESPIEEGKTT EEKPIEPVEE EKVSEKPVKE1320
 1321 EGKPTEEEKG TEKEEKPIEE EKPTEKSVEE EKPTEKSIEE QPTEEQKPTE EPIGEEHPVE1380
 1381 EQKPIEVSTE LPAEEQKPTE GPIEEEKSTA PAEKEEPSEE EKSTTEAPVQ EEESSEQPKK1440
 1441 EEEEEEEVQQ SEGPVEKEKP AEEAKPTEQP IEEEGQGVTE KIAEEEKPSV EPVEQEKTTV1500
 1501 EPVAEEKPSE IAPSQEAVPV EISTEGATME EKPSESAEPV STEVPIVEET VSPSAPKETA1560
 1561 EASTELPKEI PENSTIAPKE EASPTEETQT ETAGPPQEKL TEAPIDHGEA STEPTKQIPE1620
 1621 QPAEEGSTRQ PESPIEATTA AAPSEEAIKE EGKIPVEEGI VTEVTPTESA PPSEETSPAE1680
 1681 EEQKVSVPEP VQTEAPSREE GTTQVSREKE TEAPPMLEEK ITEEKTTSAP KKGEIPETTP1740
 1741 YTETSSKVGT EGVVEQSTLA GGIPEEEVST QPPYNIPPTI PGEGNCLVEG QSYSNNSAIP1800
 1801 PSNPCQLGCR CVSSIIQCDL VQCPPPPSHL SNCMPLHIGK DSCCPMYACD STPTAGLESD1860
 1861 NHMIEHETPK YEEEERQKTV PPLEAELPKE GTTEGVEVKE HSTTVAPKVI PSEEQTTAAP1920
 1921 GSVEEAQTTP KSVDHTQATT VEGAKEAEEH TLSPVQVESS SQIPSEEALK ESSSEIPSSS1980
 1981 ISAEEERATE PIEKHEEQQP SSPAAGEEQT TQPIRKEEET SVGIEKEIPT TVKPTDEQLA2040
 2041 EEEEKSAKGE EQATVSPAIS QEGTSQRSEV PSSTLVPEGQ ESGETQRPLE EGTTLSAESV2100
 2101 TTQPEEEKKE QPEQPAEDES QTVQPSESEK PSPSTVEPST PEQEATPVEQ ETVKPIESEA2160
 2161 PGTTKMEIST EVPTSEEATE SGVTKEGPSK TEAPQEEEEV TTPSEAEEAP KKPEISPTEA2220
 2221 APAGTEQPLI IPTTLAGEQT KETIAPEGTL KVTTEAVTVE EQHTEIPEQQ TVSVEQVASS2280
 2281 TESAEPSTEK EPSIPTETKE TTEEQGITEE QQPTESKPEE EPTSSEPAPS AEEQTPSGEE2340
 2341 EATPSSVSKE AITEAVHEAT TMKAAPVEVT LPQEQTEQPG AAIEKETVAP VTEETVTEKV2400
 2401 KEETVEPEEH VTTEKAVSIE GEEAPETTAP VEVAGQVTEK VEQATESAVP VEKEATIAPE2460
 2461 QTQKPEEGTQ KSVVEGEGVT AKIEEQSSET SSPMDYTPSP ISPEEKEEKK PEVVTEGMPE2520
 2521 EKATTVPSEV TPPQEEQQAS VTERKPEEGV PEATEAPSME EATGGPVEEE KGEEQTTPAL2580
 2581 ETEKATVSPK TPFEAAPTEV PEKMVPEEVP SETPEQALST EQPVQLTEAP EKMAPSTEAP2640
 2641 EKMATSTEAP EKMAPSTEAP EKIAPSTEAP EQEISSEAPS EKTATPEAPE YSTELPEKAI2700
 2701 PEEVPEKEVP TEAQEEAITT EKSSEVPSEV LTKTQPTEAA EDQVTEVPGQ IIPEEEKPSE2760
 2761 VTEKIVPEEE KPVTTTEKVL HEEEEKPVEV TERIVPEEEK PVQTTEKIIP EEEKPAEVTE2820
 2821 KLVPEEEKPA ETTEKELPSE EEKPAETTEK ILSSEEEKPV EVTEEQKPAV EGEQQTVEPE2880
 2881 EEKEEEVSQT TEDLSLKEQL PEQAATQAPQ EATKLPTTEE EELARPTTAA VEVEATSPQE2940
 2941 EQPSPITEST ETTIAPEVHE DTTKEAEPSE EAQLGVTKAQ PAMPEAQPSV EPAVETSTEH3000
 3001 EEEVAQAETE KAPEEHPAVQ VSTEQPEEKS TVEPATIPEE PKEEEASPKP EEDQQSTEAS3060
 3061 VEAPTTKAPT LPTEPSLAES SEEEQEGEVE EPGLPETSGS TTEKEESAEG LDHHLPSMNQ3120
 3121 TFETTERPVQ PTTLRQPTST LAPQIPEYSD QVSGEENPHF PTHGGSYLSN EDYDEDDQAI3180
 3181 YGPGTCRYGG KVYVSAQQIP RDDPCDFCFC FRSDIICLQQ SCPPPIPGCH EEPINGFCCP3240
 3241 RYECPVSMAT SLNITTTTTT TTTTLPPHFH AHAYKGAAKR SGCQIRGQAY RVGEVIRSAS3300
 3301 GPCLQCTCGG DGNMKCDPRV CSPEPMLRQM IAAATARRRR 

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