YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110679439, gi...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.50
Transmembrane Helix	20	40	0.48
Non-Cytoplasmic	41	384	0.83
Transmembrane Helix	385	411	0.79
Cytoplasmic	412	412	0.31
Transmembrane Helix	413	428	0.46
Non-Cytoplasmic	429	430	0.53
Transmembrane Helix	431	453	0.85
Cytoplasmic	454	465	0.56
Transmembrane Helix	466	483	0.64
Non-Cytoplasmic	484	511	0.59
Transmembrane Helix	512	534	0.91
Cytoplasmic	535	562	0.63
Transmembrane Helix	563	585	0.88
Non-Cytoplasmic	586	596	0.55
Transmembrane Helix	597	623	0.76
Cytoplasmic	624	634	0.45
Transmembrane Helix	635	654	0.83
Non-Cytoplasmic	655	669	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDAGTRRLP DPKDSPMISV VLRCCACLLI CAALIGPAPA QDSQAPIQQL LQTHGEIIKK  60
   61 SSRRTIGPAI DALANSGMVE AQSILQRWQD KEMWYNKSTG VFVFAQPAEG DALALFDVAG 120
  121 GGALPQGDAD DYKQLKPNSG IRAMIGAALV QFQLNSPDPA ERAVALSAIE RDADPSHLTA 180
  181 LRSVAATETD PALKLRKERL ERLLTIRFDT DDTARIAAIE SFSGDLGVDL RAALNPLVAT 240
  241 RIEVGETVPD GARALEVGSD ALPRVTAYDA LIARDLAPPR VSTDNMRDTL IANIDAGQIA 300
  301 GVQVASLNTD DARAAAYALL AASGLAQPLV TEADIDAALA SFRFFEVFTG APLPVAQAAQ 360
  361 TALEQIETRV AVNQTADLAL DALSLASIYF LAAIGLAITF GVMGVINMAH GEFIMMGAYT 420
  421 GYVVQLFIPD YTLSILLAIP LAFMVTFGAG VAMERLVIRW LYHRPLETLL ATFGVSIALQ 480
  481 QLAKNIFGTQ ARPLTAPGWL DGSWVINDIV SISYIRIAIF FLALMFLALF LFVMKRTRLG 540
  541 LEVRAVTQNP RMAASMGINP DRINMLTFGF GSGIAGIAGV AIGLYSKVTS EMGSEYIVQS 600
  601 FMTVVVGGVG NIWGTLLGAT MVGTLQKGIE WLNPSNTLAA QTYMILFIIL FIQFRPRGII 660
  661 ALKGRAAEA