YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109455239, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.60
Transmembrane Helix	12	46	0.73
Non-Cytoplasmic	47	55	0.71
Transmembrane Helix	56	73	0.93
Cytoplasmic	74	84	0.83
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	111	0.85
Transmembrane Helix	112	133	0.92
Cytoplasmic	134	150	0.84
Transmembrane Helix	151	172	0.87
Non-Cytoplasmic	173	205	0.91
Transmembrane Helix	206	227	0.94
Cytoplasmic	228	242	0.85
Transmembrane Helix	243	262	0.87
Non-Cytoplasmic	263	263	0.39
Transmembrane Helix	264	283	0.65
Cytoplasmic	284	292	0.50
Transmembrane Helix	293	314	0.84
Non-Cytoplasmic	315	320	0.53
Transmembrane Helix	321	343	0.92
Cytoplasmic	344	350	0.60
Transmembrane Helix	351	372	0.88
Non-Cytoplasmic	373	380	0.59
Transmembrane Helix	381	403	0.88
Cytoplasmic	404	627	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGFLYQASI YLAAAVIAVP IAARLGLGSV LGYIAAGIII GPVLGLVGAE TQDLQHFAEF  60
   61 GVVVMLFLIG LELEPRALWD MRNRLLGLGG LQVALSTLAL MGIAMAYDQP WGVALAIGLS 120
  121 LSLSSTAIVL QTLSEKGLMQ TNGGRNVFSV LLAQDIAVIP MLAFLPLLVV TIPLQIAQDG 180
  181 SIIVTATSHA GGDAHHSLSL VDGLPAWGVT LVTIGAIAAV IFAGVYLTRP LFRFIHAARL 240
  241 REMYTALALL IVVGISFLMT LVGLSPALGA FLAGVVLANS EFRHELESDL EPFKGLLLGL 300
  301 FFITVGAGIN FPLLFDNTPA ILSMALLVII VKGLILFVLG WAFKLKGRDQ WLFALGLAQA 360
  361 GEFGFVLTSF SVQQNVIPLE IAETLLLVIA LSMLITPLLF IIYDVLSRRM EEQVEQHPDD 420
  421 EIDEQGPVII AGVGRFGQIV NRLVQANGFK TVVLDQDMET IAVMRRFGYK GFLGDPNRPD 480
  481 ILRAAGIDSA KVLVVALDDP EASIKLVKYA RSIRPDLHII ARARDRTFVY RLFQAGASDI 540
  541 VREMFDSSLR AGRYVLENVG LSEFEAAEAE RVFYHHDRKT IRQLADLWDP SRPASQNPAY 600
  601 VARAKELQKE LETAILSRSI SAKNTDG