YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190909002, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVNIGKDN SRHSFVFTGK GGEYFLICLV SFLLTIITLG IYGPWALIKC RRYIYQHVTL  60
   61 KGQPFSYKGT GGAIFVSMLL IVVVYLLSIS CFAGQHFALG LFLFALLICG IPCMAVKSLQ 120
  121 YQANMTSLND IRFGFNCSMM RAWWVMLGLP VLLALVFWFA LYLIAQVTTS IGGLFFNLVA 180
  181 LSLLSAIGLG VVHGITYSKW MPLLGNNATF GIHKFSIQVN VKECIKGCML AILTMVPFII 240
  241 VIGIMIAPVF QQLMMMTMLG RSDAGSEFVL QYYPQIMASY FLYFVAILVF ASYLYVTLRN 300
  301 LFLNNLTLAN GTIRFHSSVT AIGMLLRMLA VLMGSSITCG LAYPWLKMWM VSWIANNTHV 360
  361 QGDLDSLELT NDDKPQDSGS LMWISRGIMP YVPFI

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.94
Transmembrane Helix	24	46	0.94
Cytoplasmic	47	66	0.88
Transmembrane Helix	67	89	0.91
Non-Cytoplasmic	90	96	0.75
Transmembrane Helix	97	119	0.90
Cytoplasmic	120	141	0.90
Transmembrane Helix	142	164	0.93
Non-Cytoplasmic	165	172	0.79
Transmembrane Helix	173	195	0.91
Cytoplasmic	196	227	0.91
Transmembrane Helix	228	250	0.90
Non-Cytoplasmic	251	277	0.90
Transmembrane Helix	278	298	0.90
Cytoplasmic	299	322	0.81
Transmembrane Helix	323	346	0.90
Non-Cytoplasmic	347	395	0.92