YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110643635, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	33	0.93
Non-Cytoplasmic	34	38	0.88
Transmembrane Helix	39	59	0.95
Cytoplasmic	60	65	0.89
Transmembrane Helix	66	86	0.93
Non-Cytoplasmic	87	98	0.92
Transmembrane Helix	99	118	0.94
Cytoplasmic	119	137	0.92
Transmembrane Helix	138	160	0.93
Non-Cytoplasmic	161	177	0.89
Transmembrane Helix	178	200	0.88
Cytoplasmic	201	212	0.89
Transmembrane Helix	213	236	0.91
Non-Cytoplasmic	237	246	0.74
Transmembrane Helix	247	268	0.91
Cytoplasmic	269	283	0.96
Transmembrane Helix	284	306	0.90
Non-Cytoplasmic	307	317	0.89
Transmembrane Helix	318	340	0.90
Cytoplasmic	341	350	0.86
Transmembrane Helix	351	373	0.85
Non-Cytoplasmic	374	574	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVELSPAT RWGMIATGLL QGLVCYLLIA WLAGKNHSWI VYGVPATVAF SSVLLFSVIS  60
   61 FKQKRLWGWL ALVFIATLGM SGWLKWQIDG MNHWRAEKAL WDFGCYLLLM AMLLLPWIQQ 120
  121 SLRIRNDSSR YRYFYQSVWH NVLILLVIFL ANGLTWLVLL LWSELFKLVG ITFFKTLFFA 180
  181 TDGFIYLTLG LVTALAVILA RTQSRLIDSI QKLFTLIATG LLPLVSLLTL MFIITLPFTG 240
  241 LSAISRHISA AGLLLTLAFL QLILMAIVRD PQKASLPWTG PLRCLIKTAL LVAPLYVFVA 300
  301 AWALWLRVAQ YGWTVDRLQG ALAVLVLLVW SLGYFVSIVW RKGQNPLVLQ GKVNLAVSVL 360
  361 VLVILVLLNS PVLDSMRISV NSHMARYQSG KNTPDQVTIY MLEHSGRYGR AALESLKSDA 420
  421 GFMKDPKRAR DLLMALDGEQ SLQKVVSEKS LAENVLIAPG SGKPDVAFWS ALIKERYNVM 480
  481 TCIEKDACVL VEQDLNSDGQ AERILFAFND DRVIVYGFDS ARKEWDALDM SLLPRQITKE 540
  541 KLLAAAKDGK LGTRPKAWRD LVVDGERLDV NLNE