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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110344151, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.70
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLPYIFLL CCGLWSTISF ADGDYIEYRG ISSNNRVTLD PLRLSNKELR WLASKKNLVI  60
   61 AVHKSQTATL LHTDSQQRIR GINADYLNLL KRALNIKLTL REYADHQKAM DALEDGEVDI 120
  121 VLSHLVASPP LNDDIAATNP LIITFPALVT TLHDSMRPLT SSKPVNIARV ANYPPDEVIH 180
  181 QSFPKATIIS FTNLYQALAS VSAGQNDYFI GSNIITSSMI SRYFTHSLNV VKYYNSPRQY 240
  241 NFLLTRKDSI VLNEVLNRFV DALTNEVRYE VSQNWLDTGN LAFLNKPLEL TEHEKQWIKQ 300
  301 HPDLKVLENP YSPPYSMTDE TGSVRGVMGD ILNIITLQTG LNFSPITVSH NIHAGTQLNP 360
  361 GGWDILPAAI YSEDRENNVS FAEIFITTPY VFVMQKAPDS EQTLKKGMKV AIPYYYELHS 420
  421 QLKEMYPEVE WIKVDNASAA FHKVKEGELD ALVATQLNSR YMIDHYYPNE LYHFLIPGVQ 480
  481 NASLSFAFPR GEPELKDIIN KALNAIPPSE VLRLTEKWIK MPNVTIDTWD LYSEQFYIVT 540
  541 TLSVLLVGSS LLWGFYLLRS VRRRKVIQGD LENQISFRKA LSDSLPNPTY VVNWQGNVIS 600
  601 HNSAFEHYFT ADYYKNAMLP LENSESPFKD VFSNTHEVTA ETKENRTIYT QVFEIDNGIE 660
  661 KRCINHWHTL CNLPASEHAV YICGWQDITE TRDLIHALEV ERNKAINATV AKSQFLATMS 720
  721 HEIRTPISSI MGFLELLSGS GLSKEQRVEA ISLAYATGQS LLGLIGEILD VDKIESGNYQ 780
  781 LQPQWVDIPT LVQNTCHSFG AIAASKSIAL SCSSTLPERY LVKIDPQAFK QVLSNLLSNA 840
  841 LKFTTEGAVK ITTSLGHIDD NHAVIKMTIM DSGSGLSQEE QQQLFKRYSQ TSAGRQQTGS 900
  901 GLGLMICKEL IKNMQGDLSL ESHPGIGTIF TITIPVEITQ QVAAVEAKAE QPIILPEKLS 960
  961 ILIADDHPTN RLLLKRQLNL LGYDVDEATD GVQALHKVSM QHYDLLITDV NMPNMDGFEL1020
 1021 ARKLREQNSS LPIWGLTANA QANEREKGLN CGMNLCLFKP LTLDVLKTHL SQLHQVAHIA1080
 1081 PQYRHLDIEA LKNNTANDLQ LMQKILMTFQ HETHKDLPAA FHALEAGDNR TFHQCIHRIH1140
 1141 GAANILNLQK LINISHQLEI TPVSDDSKPE ILQLLNSVKE HIAELDQEIT VFCQQND

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle