YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110343969, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLLIIDAN LGQARAYMAK TLLGAAARKA KLEIIDNPND AEMAIVLGDS IPNDSALNGK  60
   61 NVWLGDISRA VAHPELFLSE AKGHAKPYTA PVAATAPVAA RGPKRVVAVT ACPTGVAHTF 120
  121 MAAEAIETEA KKRGWWVKVE TRGSVGAGNA ITPEEVAAAD LVIVAADIEV DLAKFAGKPM 180
  181 YRTSTGLALK KTAQELDKAV AEATPYEPAG KTQTATTEGK KESAGAYRHL LTGVSYMLPM 240
  241 VVAGGLCIAL SFAFGIEAFK EPGTLAAALM QIGGGSAFAL MVPVLAGYIA FSIADRPGLT 300
  301 PGLIGGMLAV STGSGFIGGI IAGFLAGYIA KLISTQLKLP QSMEALKPIL IIPLISSLVV 360
  361 GLAMIYLIGK PVAGILDGLT HWLQTMGTAN AVLLGAILGG MMCTDMGGPV NKAAYAFGVG 420
  421 LLSTQTYGPM AAIMAAGMVP PLAMGLATMV ARRKFDKAQQ EGGKAALVLG LCFISEGAIP 480
  481 FAARDPMRVL PCCIVGGALT GAISMAIGAK LMAPHGGLFV LLIPGAITPV LGYLVAIIAG 540
  541 TLVAGLAYAF LKRPETQIVE KNA

Type	Start	End	Confidence
Cytoplasmic	1	232	0.75
Transmembrane Helix	233	256	0.88
Non-Cytoplasmic	257	266	0.65
Transmembrane Helix	267	291	0.86
Cytoplasmic	292	302	0.61
Transmembrane Helix	303	329	0.85
Non-Cytoplasmic	330	348	0.67
Transmembrane Helix	349	369	0.95
Cytoplasmic	370	380	0.65
Transmembrane Helix	381	404	0.80
Non-Cytoplasmic	405	426	0.67
Transmembrane Helix	427	450	0.82
Cytoplasmic	451	488	0.64
Transmembrane Helix	489	511	0.89
Non-Cytoplasmic	512	525	0.60
Transmembrane Helix	526	551	0.83
Cytoplasmic	552	563	0.75