YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110641297, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIILLSL LILLPLTVTS KPLIPIMKTL FTDVTGTVPD AEEIARKAEL FRQQTGIAPF  60
   61 IVVVPSVNEA SFRQNGKAML AHAASSMSNV KGSVLLLFTT REPRLIMITN GQVESSMDDK 120
  121 HLGLLVENHT LAYLHADLWY QGINNALAVL QAQILKQPTP PLTYYPHPGQ QHENDPPGST 180
  181 TTLGLFAWAV AFIVFAAFFN YTTRLYYALK FAVAMAVANM GYQALCLYID NSFAITRISP 240
  241 LWAGLIGVCT FIAALLWTSK R

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	179	0.99
Transmembrane Helix	180	199	0.93
Cytoplasmic	200	206	0.73
Transmembrane Helix	207	229	0.86
Non-Cytoplasmic	230	237	0.78
Transmembrane Helix	238	258	0.94
Cytoplasmic	259	261	0.84