YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190907431, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNIKQGS EAHFPEYPLA SPSNNEIDLL SLIEVLWRAK KTVMAVVFAF ACAGLLISFI  60
   61 LPQKWTSSAV ITPAEAIQWQ DLEKTFTKLR VLDLDINIDR GGAFNLFIKK FQSVSLLEEY 120
  121 LRSSPYVMDQ LKEAKIDELD LHRAIVALSE KMKAVDDNAS KKKDEPSLYT SWTLSFTAPT 180
  181 SEEAQKVLAG YIDYISALVV KESIENVRNK LEIKTQFEKA KLAQDRIKTK NQLDANIQRL 240
  241 NYSLDIANAA GIKKPVYSNG QAVKDDPDFS ISLGADGIER KLEIEKAVTD VAELNGELRN 300
  301 RQYLVEQLTK ANINDVNFTP FKYQLRPSLP VKKDGPGKSI IVILSALIGG MVACGGVLLR 360
  361 HAMASRKQDA MMADHLV

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	61	0.93
Non-Cytoplasmic	62	339	0.96
Transmembrane Helix	340	362	0.88
Cytoplasmic	363	377	0.91