YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110640595, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	35	0.97
Non-Cytoplasmic	36	55	0.90
Transmembrane Helix	56	78	0.90
Cytoplasmic	79	92	0.89
Transmembrane Helix	93	115	0.90
Non-Cytoplasmic	116	146	0.95
Transmembrane Helix	147	168	0.89
Cytoplasmic	169	190	0.92
Transmembrane Helix	191	214	0.89
Non-Cytoplasmic	215	230	0.90
Transmembrane Helix	231	253	0.90
Cytoplasmic	254	262	0.86
Transmembrane Helix	263	285	0.85
Non-Cytoplasmic	286	321	0.90
Transmembrane Helix	322	341	0.93
Cytoplasmic	342	349	0.86
Transmembrane Helix	350	369	0.93
Non-Cytoplasmic	370	404	0.87
Transmembrane Helix	405	425	0.83
Cytoplasmic	426	449	0.77
Transmembrane Helix	450	471	0.90
Non-Cytoplasmic	472	477	0.77
Transmembrane Helix	478	497	0.94
Cytoplasmic	498	677	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLSHSREK DKINPVVFYT SAGLILLFSL TTILFRDFSA LWIGRTLDWV SKTFGWYYLL  60
   61 AATLYIVFVV CIACSRFGSV KLGPEQSKPE FSLLSWAAML FAAGIGIDLM FFSVAEPITQ 120
  121 YMQPPEGAGQ TIEAARQAMV WTLFHYGLTG WSMYALMGMA LGYFSYRYNL PLTIRSALYP 180
  181 IFGKRINGPI GHSVDIAAVI GTIFGIATTL GIGVVQLNYG LSVLFDIPDS MAAKAALIAL 240
  241 SVIIATISVT SGVDKGIRVL SELNVALALG LILFVLFMGD TSFLLNALVL NVGDYVNRFM 300
  301 GMTLNSFAFD RPVEWMNNWT LFFWAWWVAW SPFVGLFLAR ISRGRTIRQF VLGTLIIPFT 360
  361 FTLLWLSVFG NSALYEIIHG GAAFAEEAMV HPERGFYSLL AQYPAFTFSA SVATITGLLF 420
  421 YVTSADSGAL VLGNFTSQLK DINSDAPGWL RVFWSVAIGL LTLGMLMTNG ISALQNTTVI 480
  481 MGLPFSFVIF FVMAGLYKSL KVEDYRRESA NRDTAPRPLG LQDRLSWKKR LSRLMNYPGT 540
  541 RYTKQMMETV CYPAMEEVAQ ELRLRGAYVE LKNLPPEEGQ QLGHLDLLVH MGEEQNFVYQ 600
  601 IWPQQYSVPG FTYRARSGKS TYYRLETFLL EGSQGNDLMD YSKEQVITDI LDQYERHLNF 660
  661 IHLHREAPGH SVMFPDA