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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110639865, gi...
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSLITIGL LSAVFLALAL SEHYGRFNSI VRLSFLLLLM ASVGYTLISW VGNPIIKLLQ  60
   61 LDKALSNEEA SRQIGQFFPE IKDKLTNTLQ LHASTNRSSN DLILASIKQK TKELNTFTFS 120
  121 GAIDLSENRK YFRFVLPPIF LIIILLIVIP SLLTDSANRI IKFDKQFLEP APFQFNLLNK 180
  181 NLSAYKNEDV EVELELIGNE IPDQCYILIH DQRFKLKRKT NGVFTYDFKN VQREETFAFE 240
  241 AAGFRSAEYN LDVQVKPDIK GLDIVLNYPA YLKKPAESIK NGGNLTIPEG TTATWNIETV 300
  301 HTETLFISFE SEKGKEVKGE KDGETFRFKK TIRNDDKYSL LVNQSKLNQP APIQYSLHVI 360
  361 KDQYPALLVE EFRDSTLMEA IQFGGSLSDD YGINRLQLHY VLKDASKKPV KKGSKTIPIE 420
  421 TGKSNQTFYF TWNIDSVQIN PGQELEYYLE VFDNDGVNGS KSTKSSVFSW KIPSKEELSE 480
  481 ELKTASTSAS NQFQEVAEQA KQLQKEMQQL EERLKSKKQL SWQDKKAMEE MVKKNQALEK 540
  541 ELEKLQENLK KLQEKQDKFD PASQELAEKM KQLEKLMNQL LDEETKKLMA ELEKLLQENA 600
  601 KKEDLDKALK NLTNKDKYLE KELERNLELF KQMQFDRELE NNIQKLEELA KKEEELAEKT 660
  661 LDQKIPKEEL VKEQEELNKE FDQLKEEMKN LEELNKELEN KKPLEDLDQE QQDIDQEMQK 720
  721 SSEELKNNQS KKAGASQKGA ADKMKKMSEK MQQMQQDMQA EEAAENMKDL RQILDNLLHV 780
  781 SFDQEALMKE FRKVQQTDPR YITLGQQQVK LKDATKIIKD SLYALAKRVP QIEAFVTKEV 840
  841 LAMNQHMDAA VQHIKERRPD LAAADEQYAM TSMNNLALML NEVLKQMQQE MASSQPKMGS 900
  901 AQCNKPKPGA SGKPKPGNMS QMQKSLSEKI EQLKKSGLSG KSYSEELAKL AAEQEMLRKS 960
  961 LQEMEKMMKE QGGKPGNELK QLSDMMEQTE RDLVNKNITN ETIMRQREIQ TRLLEAEKSV1020
 1021 REREWDNTRE SKTADQKPNE YPPSLEKYLK AKEKQLELIK TIPPSYTPYY KEEIDDYFKN1080
 1081 LD

YRC Informatics Platform - Version 3.0
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