YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUCB1_BOVIN
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVFYSRL LAAATLRSHR PRTALPAAAQ VLGSSGLFNN HGVQIQHQQQ RNLSLHEYLS  60
   61 MELLQEAGVS IPKGHVAKSP DEAYAIAKKL GSKDVVIKAQ VLAGGRGKGT FESGLKGGVK 120
  121 IVFSPEEAKA VSSQMIGKKL FTKQTGEKGR ICNQVLVCER RYPRREYYFA ITMERSFQGP 180
  181 VLIGSSHGGV NIEDVAAETP EAIVKEPIDI VEGIKKEQAV RLAQKMGFPA SIVDSAAENM 240
  241 IKLYDPFLKY DATMVEINPM VEDSDGAVLC MDAKINFDSN SAYRQKKIFD LQDWTQEDER 300
  301 DKDAAKADLN YIGLDGNIGC LVNGAGLAMA TMDIIKLHGG TPANFLDVGG GATVHQVTEA 360
  361 FKLITSDKKV LSILVNIFGG IMRCDVIAQG IVMAVKDLEI KIPIVVRLQG TRVDDAKALI 420
  421 ADSGLKILAC DDLDEAAKMV VKLSEIVTLA KQAQVDVKFQ LPI

Type	Start	End	Confidence
Signal Peptide	1	26	0.77
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	463	0.99