YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110645443, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKNGDGFS EVAEEGPSGI LNKMFPKMIT QSAAKDWINR RRAQIRPWKN FVDQRRFSRP  60
   61 PNFGELCKRV TRNIEHFQSN YIFIFLGLIL YCIITSPMLL IALAVFFGGC YIVYLRTLQS 120
  121 KMVLFGRELS TANQYGLAGA VSFPFFWLAG AGAAVFWVIG ATLVVIGSHA SFHAIEGDFE 180
  181 ELQMEPV

Type	Start	End	Confidence
Cytoplasmic	1	81	0.88
Transmembrane Helix	82	115	0.81
Non-Cytoplasmic	116	144	0.71
Transmembrane Helix	145	167	0.87
Cytoplasmic	168	187	0.74