YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89130685, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVAGLVSLT ILYCWSSTPK NCPAPQTNPK QYIERYFGEK SDSPTGTPKE KPILLLWFWP  60
   61 QNYYFDFSDC KTIYDIDGCH LTDNRSLYDK SDDVLIFHRG IHWDLSNLPP SPRPRFQRWI 120
  121 WFNVESPTNT AKIPGLENLF NLTLSYRHDS DILVRLRLRT RKKPEEDFVI PKKDKLVCWI 180
  181 VSNNLEWTGV GTRKKFFEEF SKHINVTLFG KAYAKFLDYN EYYPTLASCK FYLSFENSIH 240
  241 EDYFTEKING PLSVGTVPVV LGPPRKNYEN FYPRDSFIHV EDFQDPKSVA EYLLQLDKDD 300
  301 VAYRRYFDWR KHLVATPHLI QQTQEFILAI CTACDYVAHH REYKEAHDIY DWFFQ

Type	Start	End	Confidence
Signal Peptide	1	16	0.71
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	355	0.99