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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110624800, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLHITLCA FLILTPTDQR VVTRTIPSFL RDDVERYPSG PELSDRSAAY TNRELYGTRA  60
   61 LPLRSAVEHI PDLIADSRRL PLRDAVEKRP PPDEPIDDYE PSFDLFYYPS RQTLYTPVQY 120
  121 FKDLVAEAYV SPFRIDNESQ ELLKYPSFAR GRSLYDSRGR HSEIVETVYD PREDDRVVCY 180
  181 VQAAARYRKE PLAFSPEDLD PFACTHVIYA FATIDPHNFN MISNDDESDI IQGGYISVTG 240
  241 LKRVNPKLKV LISVGEGRDG SHRFSTMVSS ANRRREFIRS AITFIKQYNF DGMDIHWEYP 300
  301 GAEKMGGQLS DKEYLNLFLE ELSEIFKPRG WVLTIAVPAS RFRVEDGFNP QRLGSLVDFI 360
  361 NLQAFDFHRE REPVADHHAN LYSRPGDSGL DLFLSVDYAV KFWTKKGFPK SKIVLGVPFF 420
  421 GRSFTLQFTN ETQVGAPIKG PGREGFYTQN PGFLAYFEIC DMLLNEGWHK GMDESGSPYM 480
  481 VYGDQWVGYD DSESVEKKVN YVQEMNLGGV FIWATDLDDF KGVCGMKWPL LSTINRHLRG 540
  541 NELLPMQQSQ NPPTKPYGTC RSEGIFSDPK NCAAYYVCRS GLSYHLSCAE NMMFDPMSGK 600
  601 CEYSLGEKCR PGQIIQVANS LRQYEDLLEY EAKEEGPKVV CYMTNWAFYR KAEGKFVPEH 660
  661 IDQRLCTHVV YAFASLDPEK LLLKEFDPWA DLDNNLYERV TSLKDTKAIL SLGGWTDSAG 720
  721 DKYSRLVGDG SARRRFVVAV VGFLRRHNFK GLHLDWNYPV CWQSNCKKGA SSDKPNFTKL 780
  781 IQVVPTMELR REFDKQKPPL ILAAAISGYK EVIDVAYDLP ALGTVLDFMS VMTYDYHGAW 840
  841 ERQTGHNFTM EYLVSRGAPR GKLLVGVPFY GQSFTLTKGN NHDQGVPSAG PGEAGEYTKQ 900
  901 PGMLAYYEIC NRIRNQRWIV NRDTSGATGP FAYHGDQWVG FEDIKSVRDK AEYIKTKGFG 960
  961 GAVAWTIDLD DFSNRCCGGS FPLLRSLNRG LGLIPDNPSR EDCTKPPEPV TPAPPQVTTG1020
 1021 VDTGASSTEH MHPDWTTKPS TWWSSTTTSP WWTTTTTRRT TTTRPTTTST TTRPTTTNWP1080
 1081 TQGTTIPPPA VVMPEVDKPS QPCEPGQYVP DPHNCNAYYR CVLGELRKQY CAGGLHWNKE1140
 1141 RKICDWPKSA KCEEKKPGHK PSTSSWQKPT KPSYRPPSTT NHWQTKTTTS TTTRPTTTVS1200
 1201 QLIDDKCDSG QYYPHESCSS FYVCVNGHLV PQNCAPGLHY NPEEHMCDWK YKVKCVGRKQ1260
 1261 LAQKYQLPKM GGPQPYSACS ENAFAAYPGD CTRYLHCLWG KYEVFNCAPG LHWDNNKNIC1320
 1321 DWPEKATCDG TSNVNVVDIV TTAKPAQSTT SVSTTTSWNP GSTTNYPEWQ PTEWHPPIPP1380
 1381 TSEKPPLPEE LKPQSGYFKI VCYFTNWAWY RKGLGKYLPE DIDPDLCTHI VYGFAVLDFE1440
 1441 NLIVKAHDSW ADFDNQFYKR VTGYKAKGIK VSLALGGWND SQGDKYSRLV NNPAARARFI1500
 1501 KHVLQFLEKW NFDGLDLDWE YPKCWQVDCK KGPDSDKQAF AAWVTELKQA FKPKGYLLSA1560
 1561 AVSPSKTVID AGYDVPVLAQ NLDWVAVMTY DFHGQWDKQT GHVAPLYYHP EDEVVFYNAN1620
 1621 FSINYWISEG VPRRKIVMGM PLYGQSFRLE KPENHGLNAK APGPGQAGEY TRAAGFLAYY1680
 1681 EICHNIKTQG WTVVQDPNRR MGPYAYKGDQ WVSFDDREMI KRKSEFIRKM DLGGGMIWAL1740
 1741 DLDDFKNRCG EGRHPLLTTI RNVLADAGTG QQETIPPIDE EPPSVEAVEE EREEAPPSVH1800
 1801 SSTVVPPPQH STTQSLVDPK SEFKVVCYFT NWAWYRQGVG KYLPSDIDPD LCTHIVYGFA1860
 1861 VLNGDQLIIK PHDTWADFDN KFYEKVTAYK SKGIKVLVAI GGWNDSAGDK YSRLVNNPSA1920
 1921 RRRFIAHVVD FIETNNFDGL DLDWEYPKCW QVDCNKGPAS DKSAFADFVK ELHEAFKPKG1980
 1981 WLLSAAVSPS RRVVDAGYDV PTLSKYLDWI AVMCYDYHGQ WDKITGHVAP MYAHPEDADA2040
 2041 TFNTNFTIHY WIEKGADRRK LVMGMPMYGQ SFSLADNNQN GLNAATYGGG EAGEETRARG2100
 2101 FLAYYEICTN VIKKGWKVVR DRRGRIGPYA YLRDQWVSFD DIGMIRHKSE FIKAMGLGGG2160
 2161 MIWALDLDDF KNLCGCEEYP LLRTINRVLR GYAKPDPKCI LGRDNDKTKP KPTTMKPTTT2220
 2221 IGYEPQEPVL PAEVVPCQGR LFVADDTNCA QYYLCNQGQL QLQVCPNGLF WNKDHCDWPE2280
 2281 NTECHPDASS TMAPSTTPMV PDKPVTTTTS RPIGTDTSDD YKVVCYFTNW AWYRQGDGKY2340
 2341 LPSDIDPSLC THINYGFAVL DSSSMTLKPH DSWADIDNEF YKKVVSYKSR GVKVLIALGG2400
 2401 WNDSAGNKYS RLVNDPQARA AFIAHVLAFI EEWNFDGLDL DWEYPKCWQV DCNKGPDSDK2460
 2461 EAFAAFVREL SAAFKPKNLL LSAAVSPSKA VMDAGYDVPA LSQYLDWIAV MTYDFHGHWD2520
 2521 KQTGHVAPLY YYPGDVYDYF NANFSLNYWI EKGADPGKIV MGMPLYGQSF SLADAADRGL2580
 2581 NAKSYGPGEA GEFTRAGGFL AYYEICERVK KRGWTVTRDP QGRIGPYAYL SNQWVSYDDI2640
 2641 AEIRRKSRLV KALKLGGGMV WALDLDDFKN RCGCGKHPLL KTLNNELRGT PSDISVTNCT2700
 2701 

YRC Informatics Platform - Version 3.0
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