YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148669040, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFNNVLYF QAGFGLLANM FLLFFYTFII LGHRPKPTDL ISCQLTFVHI IMFLTGGDIW  60
   61 LTDIFETLNI ENDFKCKTIF YISRVMRGLS ICTTCLLSVV QAVTISPSTS LLAKFKQRLK 120
  121 MYLIYAFFCI WSFNLSFSSR LIFYVAGFTN VSENHQMKVT KSCSLFPMNY IIRGLILTVT 180
  181 MSRDVFLVGV MLTTSAYMLN ILFRHQRQCK HLHSIRHLRA SPEKRATQTI LLLVVFFVVM 240
  241 YWVDFIISST SVLLWRYDPV VLTVQKFVMY AYPTITPLVQ ISSENRIITM LKNRQSKHLQ 300
  301 NVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	39	0.83
Transmembrane Helix	40	61	0.87
Non-Cytoplasmic	62	87	0.85
Transmembrane Helix	88	111	0.81
Cytoplasmic	112	121	0.86
Transmembrane Helix	122	144	0.91
Non-Cytoplasmic	145	184	0.91
Transmembrane Helix	185	204	0.93
Cytoplasmic	205	225	0.94
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	303	0.71