YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C3H63_ORYSJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
   61 DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA 120
  121 TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV 180
  181 AVRGSVYSPG QSVTSPSQHT YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV 240
  241 PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV 300
  301 QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI 360
  361 CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR 420
  421 SRRITHSDSQ QIPSGERGTE REAS

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	444	0.99