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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125585956, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCIVVVFG VLVLVAGMAA AQGQVPSPTP AAAAAAPAPT PDCNGILLTY NFEGRAKIRP  60
   61 YVADRNKQPY SFRANATVLN SGTRPLKSWA MLVTFGYGEI LVGVDGAVLT GGGEMPYNTT 120
  121 QDAGNATSFS GYPQTDLLTP IATAGDISQI QAKVGIVGTL FAGPGPFVPL PTALSLDDPA 180
  181 YRCPQETNVS SGVLSTCCVL TPEAEANATV INANATDPTK NFLPRGTGDL VITYDVLQAY 240
  241 PSSYLALVTL DNNAKLGRLD NWRLSWEWRR GEFIYSMKGA YPSEKDTTGC IYGAAGQYYQ 300
  301 SLDFSQVLNC DKKPVILDLP LSRYNDTQIG KIDHCCRNGT ILPKSMDETQ SKSAFQLQVF 360
  361 KMPPDLNRTK LFPPANFKIA GASSLNPDYT CGQPVPVSPT EFPDPSGLDS TTLAIATWQV 420
  421 VCNITTSKGA KPKCCVTFSA YYNDSVIPCN TCACGCPSNQ RGPTCSTTAQ SMLLPPEALL 480
  481 VPFDNRTQKA LAWAELKHYN VPKPMPCGDY CGVSINWHIS TDYNKGWSAR MTLFNWDNVD 540
  541 LANWFAAIVM DKAYDGFEKA YSFNSTSVGK NTIFMQGLEG LNYLVKQTNM SGSDYLVPGK 600
  601 QQSVLSFTKK LTPGINVVAG DGFPSKVFFN GDECAMPQRI PMSNSGFRTH LSSVLSLVLV 660
  661 LAASAFVLLQ Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle