YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108707651, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSRGQRPP PLQLAVACGF VHLICLAAVA GGGGPCEFSV ARGGKLYSFS LASPTTAHRH  60
   61 GVLSEDGFYK VAVNNSVLWF QLCDQMIFNF DPPVCLNCED CGGPQRCGTQ CSALVSNNRG 120
  121 GYDVCTTIGR ASKSHISLID DINPQKGVVV KMFSSKCSIS VYIYCDSTVA HVSDQFVLSG 180
  181 SCDYATTLRH PSGCAQSMSA SGNGWGWLAT SFVTILCLLG GYILIGSIYR YYFLGIHSVE 240
  241 AIPNLEFWIS LPQTIKVSSL CFCF

Type	Start	End	Confidence
Signal Peptide	1	30	0.83
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	204	0.93
Transmembrane Helix	205	226	0.90
Cytoplasmic	227	264	0.81