YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125542931
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGAAGYSGS VKLKYVKLGY QYLVNHFLTL LLVPVMAATA LELARMGPGE LLSLWRSLQL  60
   61 DLVHILCSVF LVVFVGTVYF MSRPRPVYLV DYSCYKPPPS CRVPFATFME HTRLITDDEK 120
  121 SVRFQTRILE RSGLGEETCL PPANHYIPPN PSMEASRAEA QLVIFSAIDD LVRRTGLKPK 180
  181 DIDILVVNCS LFSPTPSLSA MIINKYKLRS NIRSFNLSGM GCSAGLISLD LARDMLQVHP 240
  241 NSNALVVSTE IITPNFYWGT RRDMMLPNCL FRMGAAAILL SNRRREARRA KYRLMHVVRT 300
  301 HKGADDRAYR CVYEEEDEQG HSGISLSKEL MAIAGDALKS NITTIGPLVL PMSEQLLFFF 360
  361 RLVGRKLINK KWKPYIPDFK LAFEHFCIHA GGRAVIDELQ KNLDLSAQHV EASRMTLHRF 420
  421 GNTSSSSLWY ELAYIEAKGR MRRGDRVWQI GFGSGFKCNS AVWKCLRTVK TPADGPWDDC 480
  481 IHRYPVDIPE VVKL

Type	Start	End	Confidence
Cytoplasmic	1	21	0.88
Transmembrane Helix	22	41	0.95
Non-Cytoplasmic	42	61	0.80
Transmembrane Helix	62	81	0.96
Cytoplasmic	82	211	0.91
Transmembrane Helix	212	232	0.75
Non-Cytoplasmic	233	263	0.88
Transmembrane Helix	264	283	0.65
Cytoplasmic	284	494	0.71