YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222624418, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSFDRWEK DPFFPAAEEV QGSADRMESV YRIWVQDRSG GDSEAAAAAA AAAVGGGGLP  60
   61 AGELRRELHT ALGTAKWQLD ELERAIRSND KVFSAGKDTK ARHDDFVAAI GCRILEVENN 120
  121 LKESNVAEGR GALSWIDLDE DERNDLATFL SASSFQQRDK VVTIPSVGDI DVGNNAAMVK 180
  181 KDMYADSSKD SGSAELSSAR VKEETHRGHR RAASAHADIG SWTMLCPNES ESSADLPYDD 240
  241 KHQEPLLKIV KTCALTSALQ SKPRTKKKGG SVKWAAVDQQ DVEETIPLSS QMGQGSDRCF 300
  301 ERSKSCVSTC DESTYNKKLY GCLGALHRRL QRSRYRIRYG RPVQLIVLAV AALLIFMCVF 360
  361 KKIW

Type	Start	End	Confidence
Cytoplasmic	1	338	0.54
Transmembrane Helix	339	360	0.90
Non-Cytoplasmic	361	364	0.47