YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115451381, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALSKLLR RRLRGGGHRL LPSRPSTSAA SQPPPPPPSA ATPPPPGAGK EAGAWSKLFL  60
   61 FAPGAITFGL GSWQLFRRQE KIEMLDYRTR RLEMEPIAWN QMAPSDLSAG VDPATPEFRR 120
  121 IVCEGDFDEE RSVFVGPRSR SISGVTENGY YVVTPLIPRP SEHGSSWPPI LVNRGWVPRD 180
  181 WRDKNVQDHQ GVREVPEYKE ADKKTDGKGS WWKFWSNSKE PEQSCEIEKP VKPPVRVLGV 240
  241 IRGSEKPSIF VPANEPSVGQ WFYVDVPMIA RACGLPENTI YIEDINEDVS PTNPYPVPKD 300
  301 VSTLIHHSVM PHDHLKYTVT WYTLSAAVTF MAAKRIKAKK VKL

Type	Start	End	Confidence
Signal Peptide	1	41	0.56
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	343	0.88