YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U496A_ORYSI
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSSSSGSH RPPRPASSES ALPPAAAAAE ELSSYEAACR SDPELRTFDT TLQRRTSRAI  60
   61 STLAVGVEVR SLSLESLREV TGCLLDMNQE VVRVILDCKK DIWKSPELFD LVEDYFESSL 120
  121 HTLDFCTALD KCLKRARDSQ LLLHVALQRF DDEEDNDAAA AGQEDAAPSA RYARTLHELR 180
  181 QFKAAGDPFT EEFFSAFQAV YRQQLTMLEK LQQRKHRLDK KVRAIKAWRR VSSIIFATTF 240
  241 AAVLICSVVA AAIAAPPVAA ALAAAASIPV GSMGKWIDSL LKGYQDALRG QKEVVSAMQV 300
  301 GTFIAIKDLD SIRVLINRVE LEISSMIDCV EFAERDEEAV KFGVEEIKKK LEVFMKSVED 360
  361 LGEQADRCSR DIRRARTVVL QRIIRHPS

Type	Start	End	Confidence
Cytoplasmic	1	230	0.95
Transmembrane Helix	231	253	0.90
Non-Cytoplasmic	254	258	0.65
Transmembrane Helix	259	277	0.84
Cytoplasmic	278	388	0.90