YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222624306, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVALEAGRR KRAAVVVLGD IGRSPRMQYH SLSLANQAGM EVDIVANGGS DPHLLLRENP  60
   61 SIHIHEMKSV QLTGILKISG ALTLLLKAAI QFIILIWYLC FKIPRPDVFI VQNPPSVPTL 120
  121 AAVKLASWLR GAKFIVDWHN FGYTLLGLSH GRSHIIVKIY FWFEKHFGRM ADGAFCVTKA 180
  181 MKHELDQKWG INATVLYDQS PEFFHPASLT EKHELFSRLG NSICSAMGND DCISVEKEVE 240
  241 DRNTTVFTSW VDGEIFLKPN RPALVVSSTS WTPDEDFSIL LEAALMYDRR VAATLGEDDS 300
  301 MDEGKLWIDI KNGKQFVYPR LLFIITGKGP DRMKYEEQIK RLKLRRVAFR TMWLASEDYP 360
  361 LLLGSADLGV SLHTSSSGLD LPMKVVDMFG CGLPVCAASF SCIDELVKIN NNGLLFSTSS 420
  421 ELADELMMLF KGFPEECDDL KSLKVGALNT GSSSKWSTEW ERYALPLVNQ VIG

Type	Start	End	Confidence
Cytoplasmic	1	77	0.69
Transmembrane Helix	78	99	0.65
Non-Cytoplasmic	100	473	0.87