YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109472098
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHGTGKYAK VVGRIWLIRP ATDSSLKDDY TVGLHPRMLL RRSDAAPSPP RSPRPSPLLG  60
   61 GASSVSPRTG RGSGLVCGLR PRPWARTRGS WAFAPRARGP SMDRAAVARV GAVASASVCA 120
  121 VVAGVVLAQY IFTLKRKTGR KTKIIEMMPE FQKSSVRIKN PTRVEEIICG LIKGGAAKLQ 180
  181 IITDFDMTLS RFSYNGKRCP TCHNIIDNCK LVTDECRRKL LQLKEQYYAI EVDPVLTVEE 240
  241 KFPYMVEWYT KSHGLLIEQG IPKAKLKEIV ADSDVMLKEG YENFFGKLQQ HGIPVFIFSA 300
  301 GIGDVLEEVI RQAGVYHSNV KVVSNFMDFD ENGVLKGFKG ELIHVFNKHD GALKNTDYFS 360
  361 QLKDNSNIIL LGDSQGDLRM ADGVANVEHI LKIGYLNDRV DELLEKYMDS YDIVLVKEES 420
  421 LEVVNSILQK TL

Type	Start	End	Confidence
Cytoplasmic	1	105	0.87
Transmembrane Helix	106	128	0.85
Non-Cytoplasmic	129	432	0.94