YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188595700, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFFKTLRN HWKKTTAGLC LLTWGGHWLY GKHCDNLLRR AACQEAQVFG NQLIPPNAQV  60
   61 KKATVFLNPA ACKGKARTLF EKNAAPILHL SGMDVTVVKT DYEGQAKKLL ELMETTDVII 120
  121 VAGGDGTLQE VVTGVLRRTD EATFSKIPIG FIPLGQTSSL SHTLFAESGN KVQHVTDAAL 180
  181 AIVKGETVPL DVLQIKGEKE QPVYAMTGLR WGSFRDAGVK VSKYWYLGPL KTKAAHFFST 240
  241 LQEWPQTHQA SISYTGPTER PPIGPEDAAP RPSLYRRILR RLASFWAQPQ DAFSPEVSPE 300
  301 VWKDVQLSTI ELSITTRNTQ LDLTSKEDFM NICIEPDTVS KGDFIIIGSK KVRDPGLRAA 360
  361 GTECLHASRC TLSLPEGTEG SFSIDSEEYE AMPVEVKLLP RKLQFFCDPR KREQMLQSTS 420
  421 Q

Type	Start	End	Confidence
Signal Peptide	1	31	0.90
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	421	0.99