YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109478740, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLLGEEP RLGSTPLAML AATCNKIGSP SPSPSSLSDS SSSFSKGFHP WKRSSSSSSG  60
   61 SCNVVGSSLS SFGVSGASRN GGSSSAAAAA AAAAAAAAAL VSDSFSCGGS PGSSAFSLTS 120
  121 SSAAAAAAAA AAAASSSPFA NDYSVFQAPG VSGGSGGGGG GGGGGSGAHS QDSSHQPVFI 180
  181 SKVHTSVDGL QGIYPRVGMA HPYESWFKPS HPGLGAAADV GSAGASSWWD VGAGWIDVQN 240
  241 PNGAAALPGS LHPAAGGLQT SLHSPLGGYN SDYSGLSHSA FSSGASSHLL SPAGQHLMDG 300
  301 FKPVLPGSYP DSAPSPLAGA GSSMLSAGPA APLGGSPRSS ARRYSGRATC DCPNCQEAER 360
  361 LGPAGASLRR KGLHSCHIPG CGKVYGKTSH LKAHLRWHTG ERPFVCNWLF CGKRFTRSDE 420
  421 LQRHLRTHTG EKRFACPVCN KRFMRSDHLS KHVKTHSGGG GSAGSGGGKK GSDTDSEHSA 480
  481 AGSPPCHSPE LLQPPEPGHR NGLE

Type	Start	End	Confidence
Cytoplasmic	1	58	0.85
Transmembrane Helix	59	77	0.50
Non-Cytoplasmic	78	84	0.50
Transmembrane Helix	85	107	0.78
Cytoplasmic	108	114	0.48
Transmembrane Helix	115	134	0.84
Non-Cytoplasmic	135	504	0.76