YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109501645, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMQLTVGSL VPKIHNLRLD GWRWVQFAVA GSFCDSYSPR VRVAGSLKPL ATKLLAARSG  60
   61 SGRPHYALLA VLTPRCISTS AALFAEAQVQ VPPVVPAASA PAAVPEVASA GPADVVQCAT 120
  121 EQSFAELGLG SYTPVGLIQN LLEYIHVDLG LPWWGAIATC TVLARCLVFP LIVKGQREAA 180
  181 KIHNHMPEMQ KFSARIREAK LSGDQAEFYK ATIEMTHYQK KHDIKFFRPL ILPLTQAPIF 240
  241 ISFFIALREM ANLPVPSLQT GGLWWFQDLT VSDPIYVLPL VVTATMWGVL ELGAETGMQS 300
  301 SDLQLMRNVI RVMPLAVLPV TIHFPSAVFM YWLSSNVFSL CQVACLRFPA VRTALKIPQR 360
  361 VVHDPSKLPP REGFLKSFKK GWKNAEIAHR LREREERMQK HLDLAARGPL RQTFTHNPLL 420
  421 QHDPSRSPNT PNSSTNSVKA NTKKPWQDTL G

Type	Start	End	Confidence
Cytoplasmic	1	65	0.80
Transmembrane Helix	66	85	0.68
Non-Cytoplasmic	86	150	0.85
Transmembrane Helix	151	173	0.83
Cytoplasmic	174	225	0.99
Transmembrane Helix	226	247	0.88
Non-Cytoplasmic	248	273	0.85
Transmembrane Helix	274	294	0.87
Cytoplasmic	295	308	0.91
Transmembrane Helix	309	333	0.84
Non-Cytoplasmic	334	451	0.74