YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109948217, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSESILML MVAFLLVLLN AFFVLSEFAL VKVRKTRLEE LVKIGNSNAK LALEMSQRLD  60
   61 TYLSATQLGI TLSSLALGWV GEPTIARLLA TLFQSINLED NSLFIHSMSV VVAFLSITFL 120
  121 HVVLGEIVPK SLAIAKSEKA TLFIARPLHV FWVAFYPVVR LFDVIAYFFL RKMGVNPKEH 180
  181 EGTHSEEELK IIVGESLREG IIDSVEGEII KNAVDFSDTS AKEIMTPRKD MVCLDEENSY 240
  241 EENIDIVLKS RFTRYPYCKG SKDNIIGMVH IRDLLSRSLF TPKMHDFKQI VRKMIIVPES 300
  301 ASISQILIKM KKEQIHTALV IDEYGGTAGL LTMEDIIEEI MGEISDEYDL KQEGVNKLEE 360
  361 GVFELEGMLD LESVEEVLHI QFDKECEQVT LGGYVFSLLE RMPMEGDTII SHGYAFEVLS 420
  421 VDGARIKRLK AIKENKEED

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	30	0.87
Cytoplasmic	31	61	0.86
Transmembrane Helix	62	81	0.81
Non-Cytoplasmic	82	102	0.76
Transmembrane Helix	103	125	0.91
Cytoplasmic	126	147	0.72
Transmembrane Helix	148	167	0.77
Non-Cytoplasmic	168	439	0.84