YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108563848, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRNQGAYLD PSESILMLMV AFLLVLLNAF FVLSEFALVK VRKTRLEELV KIGNSNAKLA  60
   61 LKMSQRLDTY LSATQLGITL SSLALGWVGE PAIAKLLAAL FESMDLRENP IFIHSMSVVI 120
  121 AFLSITFLHV VLGEIVPKSL AIAKSEKAAL FAARPLHVFW VVFYPVVRLF DVIAHFFLKK 180
  181 VGINPKEHDG THSEEELKII VGESLREGII DSVEGEIIKN AVDFSDTSAK EIMTPRKDMV 240
  241 CLDEENSYEE NIDIVLKGHF TRYPYCKGSK DNIIGMVHIR DLLSRSIFTP KMHDFKQIVR 300
  301 KMIIVPESAS ISQILIKMKK EQIHTALVID EYGGTAGLLT MEDIIEEIMG EISDEYDLKQ 360
  361 EGINKLEEGV FELEGMLDLE SVEEALHIEF DKECEQVTLG GYVFSLLERM PMEGDIIVSH 420
  421 GYAFEVLSVD GARIKRLKAS KENKD

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.89
Transmembrane Helix	15	38	0.88
Cytoplasmic	39	69	0.88
Transmembrane Helix	70	89	0.85
Non-Cytoplasmic	90	110	0.76
Transmembrane Helix	111	133	0.92
Cytoplasmic	134	152	0.76
Transmembrane Helix	153	170	0.73
Non-Cytoplasmic	171	445	0.83