YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRTAM_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWWGVLSLLF WVPVQAAFLK METVTVEEGQ TLTLTCVTSQ TKNVSLQWLA PSGFTIFLNQ  60
   61 HPALKSSKYQ LLHHSATQLS ISVSNVTLRE EGVYTCLHYG SSVKTKQVRV TVLVTPFQPT 120
  121 VEALVLRRQN GEKSVVLKCS TERSKPPPQI TWLLGEGLEI YGELHHEFEA DGKICNTSST 180
  181 LIARAYGKNS TVHCIIQHEG LHGRKLVAPF QFEDLVADQE TTSDAPEQSS LSSQALQQPT 240
  241 STVSMMENSS IPETDKEEKE HATQDPGLST EASAQHTGLA RRKSGILLLT LVSFLIFILF 300
  301 IIVQLFIMKL RKAHVVWKKE SEISEQALES YRSRSNNEET SSQENSSQAP QSKRCMNYIT 360
  361 QLYSGAKTKK SAQHWKLGGK HSRVPESIV

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	284	0.99
Transmembrane Helix	285	308	0.92
Cytoplasmic	309	389	0.99