YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148707245, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKRIAVIG AGISGLGAIK CCLDEDLEPT CFERNDDIGG LWKFQKNASE KMPSIYRSVT  60
   61 INTSKEMMCF SDFPIPDHFP NYMHNSKLMD YFRMYAKRFS LLDYIRFKTT VRSVRKRPDF 120
  121 HIHGQWDVVV ETDGKQESLV FDGVLVCSGH HTDPHLPLKS FPGIEKFEGC YFHSREYKSP 180
  181 EDYVGKRIIV VGIGNSGVDI AVELGRVAKQ VFLSTRRGSW ILHRVWNNGY PMDSSFFTRF 240
  241 HSFLQKILTT EAVNKYLEKT LNSRFNHAHY GLQPQHRPLS QHPTISDDLP NHIISGKVQV 300
  301 KPNVKEFTGT DVHFDDGTVE ENIDVVIFAT GYSISFPFLG DLIAVTDNEV SLYKLMFPPD 360
  361 LEKPTLAVIG LIQPLGIILP IAELQSRWAV RVFKGLSKLP SVKAMKADMD QRKKAMEKRY 420
  421 VKTARHTIQV DHIEYMDEIA SLAGVKPNLL LLFLSDPTLA MEVFFGPCTP YQYRLQGPGK 480
  481 WDGARRAILT QRERIIKPLK TRITSEKSRS APGLFWIKMA LFGLAFLVPS LTYFSYICQ

Type	Start	End	Confidence
Signal Peptide	1	17	0.87
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	513	0.83
Transmembrane Helix	514	537	0.86
Cytoplasmic	538	539	0.44