YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109730377
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.89
Non-Cytoplasmic	58	134	0.94
Transmembrane Helix	135	159	0.84
Cytoplasmic	160	174	0.81
Transmembrane Helix	175	199	0.83
Non-Cytoplasmic	200	205	0.73
Transmembrane Helix	206	227	0.93
Cytoplasmic	228	238	0.80
Transmembrane Helix	239	258	0.84
Non-Cytoplasmic	259	261	0.61
Transmembrane Helix	262	285	0.72
Cytoplasmic	286	485	0.76
Transmembrane Helix	486	509	0.88
Non-Cytoplasmic	510	521	0.82
Transmembrane Helix	522	544	0.86
Cytoplasmic	545	556	0.72
Transmembrane Helix	557	578	0.82
Non-Cytoplasmic	579	589	0.74
Transmembrane Helix	590	611	0.92
Cytoplasmic	612	618	0.82
Transmembrane Helix	619	638	0.94
Non-Cytoplasmic	639	649	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSPTAR LLQKWCSHES PFGCRRHYNS RKKLKLIRVI GLVMGLVAVS TVPFSISAFT  60
   61 ETDSQSNRGE ASDMSGPRVA QGHRQRTLLD LNDKIRDYTP QPPASQEDQA ENSTEHTQGD 120
  121 YPKDIFSLEE RRKGAIILHV IGMIYMFIAL AIVCDEFFVP SLTVITEKLG ISDDVAGATF 180
  181 MAAGGSAPEL FTSLIGVFIA HSNVGIGTIV GSAVFNILFV IGMCALFSRE ILNLTWWPLF 240
  241 RDVSFYIVDL LMLITFFLDN VIMWWESLLL LTAYFAYVVF MKFNVQVERW VKQMISRNNV 300
  301 IKVTVPEAQA KSPTAGDKDG PTLPSKPRLQ RGGSSASLHN SLMRNSIFQL MIHTLDPLAE 360
  361 GRFREKASIL HKIAKKKCQV DENERQNGAA NHVEKIELPN STSTEVEMTP SSEASEPVQN 420
  421 GNLSHNIEAA DAPKATETAE EEDDQPLSLS WPTNTRKQAT FLIVFPIVFP LWITLPDVRK 480
  481 PASRKFFPIT FFGSITWIAV FSYLMVWWAH QVGETIGISE EIMGLTILAA GTSIPDLITS 540
  541 VIVARKGLGD MAVSSSVGSN IFDITVGLPL PWLLYTIIHR FSPVTVSSNG LFCAIVLLFI 600
  601 MLLFVILSIA LCKWRMNKIL GFIMFGLYFV FLVVSVLLED KVLVCPVSI