YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109520331
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLPKVVRK KTLYKSVCLA LALLVAVTVF QRSVTPGQFL QDPLPPTLGP PKTGSLVNPN  60
   61 SFWKSSKDVV APTPTVPRGP QVWDVVTTNC SINVNLTHQP WFQNLEPHFR QFLAYQHCRY 120
  121 FPMLLNHPEK CAGDVYLLVV VKSVITQHDR REVIRQTWGH EWESAGPDRG AVRTLFLLGT 180
  181 ASKQEERTHY QQLLAYEDRL YGDILQWDFL DSFFNLTLKE IHFLKWLDIY CPNVPFIFKG 240
  241 DDDVFVNPTN LLEFLSDRQP QENLFVGDVL KHARPIRKKD NKYYIPAVMY SKATYPPYAG 300
  301 GGGFLMSGSL ARQLHHACDT LELFPIDDVF LGMCLEVLGV KPTGHEGFKT FGISRVRGSR 360
  361 MNKEPCFYRS MLVVHKLLPA ELLAMWDLVH SNLTCSLKFQ VL

Type	Start	End	Confidence
Signal Peptide	1	31	0.98
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	402	0.99