YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109507049
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIKMATLAN GQADNASLST NGLGSSPGSA GHMNGLSHSP GNPSTIPMKD HDAIKLFIGQ  60
   61 IPRNLDEKDL KPLFEEFGKI YELTVLKDRF TGMHKGCAFL TYCERESALK AQSALHEQKT 120
  121 LPGMNRPIQV KPADSEQRPS SPNFVLEDRK LFVGMLNKQQ SEDDVRRLFE AFGNIEECTI 180
  181 LRGPDGNSKG CAFVKYSSHA EAQAAINALH GSQTMPGASS SLVVKFADTD KERTMRRMQQ 240
  241 MAGQMGMFNP MAIPFGAYGA YAQALMQQQA ALMASVAQGG YLNPMAAFAA AQMQQMAALN 300
  301 MNGLAAAPMT PTSGGSTPPG ITAPAVPSIP SPIGVNGFTG LPPQANGQPA AEAVFANGIH 360
  361 PYPAQSPTAA DPLQQAYAGV QQYAGPAAYP AAYGQISQAF PQPPPMIPQQ QREGPEGCNL 420
  421 LIYHLPQEFG DAELMQMFLP FGNVISSKVF VDRATNQSKC FGFVSFDNPA SAQTAIQAMN 480
  481 GFQIGMKRLK VQLKRPKDAN RPY

Type	Start	End	Confidence
Cytoplasmic	1	240	0.74
Transmembrane Helix	241	262	0.69
Non-Cytoplasmic	263	503	0.58