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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109506343, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.69
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAMAVPEL RSLPYRAPFT KFLLTLWVFS FVGEACKDVT FYVPSTLEAD KIIGRVSLKE  60
   61 CLSSADGIMP SDPDFRVLDD GSVYPTRAVV LSDEKRSFTI QLSDSKMRKQ KEITVILERQ 120
  121 KEVMMKRHTN ETVLRRAKRR WAPIPCSMQE NSLGPFPLFL QQVQSDSAQN YNIFYSISGR 180
  181 GVDQEPLNLF FIERDTGNLY CTRPVDREEY DVFDLIAYAS TADGYSADLP LPLPIKVEDE 240
  241 NDNYPLFTEA IYNFEVPESS RLGTVVGTVC ATDKDEPDTM HTRLKYSILE QSPPSPGLFS 300
  301 VHPDTGVITT VSHYMDREVV DKYKLILKVQ DMNGQFFGLI STSTCIITVQ DSNDNAPTFR 360
  361 QNAYETSVEE NTYNVEILRI PVDDKDMVNS ANWKANFTIL KGNENGWFKI TTDPATNEGV 420
  421 LCVVKPLDYE ENRQVTLEIG VNNEAPFIRD VASRIPTMNR AMVTVQVRDQ NEGPECKPRE 480
  481 QIVRIKENSA IGSKINGYKA YDPETKNSNG LRYKKLQDPK DWVSIEEVSG SLTISKILDR 540
  541 EIMAPRNDLY NITVMAIDQE GRSCTGTLAV NIEDMNDNAP EIIQDDIVIC KPRMGYTDIS 600
  601 AVDPDEPIHG PPFQFALASS SPEVNRIWTL NQVNDTAARL SYQKTADVQI YSVPVTVTDR 660
  661 AGQSATKILR VNLCDCTHPS QCLLRSRRAG ITLGKWAILA ILLGIALLFS VLLTLVCGVV 720
  721 TAQKGKHFPE DLAQQNLIIS NTEAPGDDRV CSANGFTTHT ANNSSQGFCG TMGSGMRNGG 780
  781 QETIEMMKGH QTLDSCRVAG HHHTLDSCRG GHMETDNCRY TYSEWHSFTQ PRLGEDS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle