YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109513815
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFHNNTIT TFILLGLTDD PQLQIPIFIF LFFAYTLSIA GNLTIIALTI LDSHLKTPMY  60
   61 FFLQNFSILE ISFTSACIPR YLYNIATGDR SITYDICVIQ VFFTDVFGVT EFFLLAIMSY 120
  121 DRYVAICKPL HYVTIMNSKV CQTLVLCCWM AGLLIILPPL TLFLNLRFCD SNVIDYFFCD 180
  181 ASPILKISCS DTWLIEQLVI VCAVLTFILT LVCVTLSYVH IVKTILRFPS AEQRKKAFST 240
  241 CSSHMIVVSI TYGSCIFIYI NPSAKDSVTI NKGVTVLMTS IAPMLNPFIY TLRNKQVRQA 300
  301 FSDSFKKIVM ISMKKKTDQI

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.71
Transmembrane Helix	27	51	0.87
Cytoplasmic	52	60	0.68
Transmembrane Helix	61	82	0.75
Non-Cytoplasmic	83	97	0.74
Transmembrane Helix	98	120	0.73
Cytoplasmic	121	139	0.86
Transmembrane Helix	140	162	0.86
Non-Cytoplasmic	163	197	0.93
Transmembrane Helix	198	221	0.91
Cytoplasmic	222	239	0.92
Transmembrane Helix	240	260	0.94
Non-Cytoplasmic	261	269	0.82
Transmembrane Helix	270	290	0.84
Cytoplasmic	291	320	0.88