YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109511090, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCSYEKKLM EVEEIDGLKH QVATEGDLKK SRGNELIADP SPTSSLKPTP LQWNKERFSC  60
   61 KIVSCFRFFS VADTRKFSAV SGETRELSRL AGSSRSPGAE AQGLGVVMAS PSRRLQTKPV 120
  121 ITCFKSVLLI YTFIFWITGV ILLAVGIWGK VSLENYFSLL NEKATNVPFV LIGTGTVIIL 180
  181 LGTFGCFATC RASAWMLKLY AMFLTLIFLV ELVAAIVGFV FRHEIKNSFK SNYENALKEY 240
  241 NSTRDYRSEA VDKIQSTLHC CGVTNYRDWK GTNYYSETGF PKSCCKLEGC YPQRDADKVN 300
  301 EEGCFIKVMT TIESEMGVVA GISFGVACFQ LIGIFLAYCL SRAITNNQYE IV

Type	Start	End	Confidence
Cytoplasmic	1	126	0.93
Transmembrane Helix	127	148	0.93
Non-Cytoplasmic	149	166	0.87
Transmembrane Helix	167	190	0.89
Cytoplasmic	191	198	0.81
Transmembrane Helix	199	221	0.92
Non-Cytoplasmic	222	317	0.93
Transmembrane Helix	318	340	0.85
Cytoplasmic	341	352	0.82