YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109511460, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.64
Transmembrane Helix	21	38	0.48
Non-Cytoplasmic	39	72	0.56
Transmembrane Helix	73	92	0.94
Cytoplasmic	93	98	0.54
Transmembrane Helix	99	121	0.78
Non-Cytoplasmic	122	182	0.50
Transmembrane Helix	183	200	0.50
Cytoplasmic	201	210	0.44
Transmembrane Helix	211	234	0.89
Non-Cytoplasmic	235	247	0.50
Transmembrane Helix	248	272	0.74
Cytoplasmic	273	283	0.38
Transmembrane Helix	284	309	0.67
Non-Cytoplasmic	310	324	0.45
Transmembrane Helix	325	349	0.85
Cytoplasmic	350	354	0.41
Transmembrane Helix	355	372	0.44
Non-Cytoplasmic	373	373	0.32
Transmembrane Helix	374	398	0.82
Cytoplasmic	399	416	0.71
Transmembrane Helix	417	437	0.84
Non-Cytoplasmic	438	441	0.68
Transmembrane Helix	442	462	0.89
Cytoplasmic	463	478	0.69
Transmembrane Helix	479	500	0.87
Non-Cytoplasmic	501	510	0.67
Transmembrane Helix	511	534	0.84
Cytoplasmic	535	727	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSDAARPG PGRAVPGLSP RLLLLPLLPM LLGRGLRAGA AASSSGAAAE DSSAMEELAT  60
   61 EKEAEESHRQ DSVSLLTFIL LLTLTILTIW LFKHRRVRFL HETGLAMIYG LIVGVILRYG 120
  121 TPATSGRDKS LSCTQEDRAF STLLVNVSGK FFEYTLKGEI SPGKINNVEQ NDMLRKVTFD 180
  181 PEVFFNILLP PIIFHAGYSL KKRHFFRNLG SILAYAFLGT AVSCFIIGNL MYGVVKLMKI 240
  241 VGQLSDKFYY TDCLFFGAII SATDPVTVLA IFNELHADVD LYALLFGESV LNDAVAIVLS 300
  301 SSIVAYQPAG LNTHAFDAAA FFKSVGIFLG IFSGSFTMGA VTGVVTALVT KFTKLHCFPL 360
  361 LETALFFLMS WSTFLLAEAC GFTGVVAVLF CGITQAHYTY NNLSVESRSR SKQLFEVLHF 420
  421 LAENFIFSYM GLALFTFQKH VFSPIFIIGA FVAIFLGRAA HIYPLSFFLN LGRRHKIGWN 480
  481 FQHMMMFSGL RGAMAFALAI RDTASYSRQM MFTTTLLIVF FTVWVIGGGT TPMLSWLNIR 540
  541 VGVEELSEED QNEHRWQYFR VGVDPDQDPP PNNDSFQVLQ GDGLDSVGGS RTKQESAWIF 600
  601 RLWYSFDHNY LKPILTHSGP PLTTTLPAWC GLMARCLTSP QVYDNQEPLR EDDSDFILTE 660
  661 GDLTLTYGDS TVTANGSSSS YTASTSLECG RRTKSSSEEV LERDLGMGDQ KVSSRGTPLV 720
  721 FPLQENA