YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109506377
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHVSSGTLW TPHAHSSLGT GRLAISIEDP KRLLGPGLLK FKTPGVSGKA SGGSFPRESS  60
   61 ARGRARCVTS LPAGRHLARL RPASDSGVVV VRAWGRVGCG GEAATRAATL SSPQLHGVGR 120
  121 RERGFGGMSA FSEAALEKKL SELSNSQQSV QTLSLWLIHH RKHSRPIVTV WERELRKAKP 180
  181 NRKLTFLYLA NDVIQNSKRK GPEFTKDFAP VIVEAFKHVS SETDESCKKH LGRVLSIWEE 240
  241 RSVYENDVLE QLKHALYGDK KTRKRTYEQI KVDENENCSS LGSPSEPPQT LDLVRALQDL 300
  301 ENAASGDAAV HQRIASLPVE VQEVSLLEKI TDKESGERLS KMVEDACMLL ADYNGRLAAE 360
  361 IDDRKQLTRM LADFLRCQKE ALAEKEHKLE EYKRKLARVS LVRKELRARI QSLPDLSRLP 420
  421 NVTGSHMHLP FAGDIYSED

Type	Start	End	Confidence
Signal Peptide	1	16	0.55
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	439	0.99