YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109506371
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIKMATLAN GQADNASLST NGLGSSPGSA GHMNGLSHSP GNPSTIPMKD HDAIKLFIGQ  60
   61 IPRNLDEKDL KPLFEEFGKI YELTVLKDRF TGMHKGCAFL TYCERESALK AQSALHEQKT 120
  121 LPGVNRPSQV RHAASVGRGE DRKLFVGMLN KQQSEDDVRR LFEAFGNIEE CTILRGPDGN 180
  181 SKGCAFVKYS SHAEAQAAIN ALHGSQTMPG ASSSLVVKFA DTDKERTMRR MQQMAGQMGM 240
  241 FNPMAIPFGA YGAYAQALMQ QQAALMASVA QGGYLNPMAA FAAAQMQQMA ALNMNGLAAA 300
  301 PMTPTSGGST PPGITAPAVP SIPSPIGVNG FTGLPPQANG QPAAEAVFAN GIHPYPAQSP 360
  361 TAADPLQQAY AGVQHYTAAY PAAYGQISQA FPQPPPMIPQ QQREGPEGCN LLIYHLPQEF 420
  421 GDAELMQMFL PFGNVISSKV FVDRATNQSK CFGFVSFDNP ASAQTAIQAM NGFQIGMKRL 480
  481 KVQLKRPKDA NRPY

Type	Start	End	Confidence
Cytoplasmic	1	233	0.75
Transmembrane Helix	234	255	0.70
Non-Cytoplasmic	256	494	0.57