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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109506346
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDYSSVQDI SVDKYLQMTC KVLVLLCNAC QKVSLQVPSH LKAEKPIGKV NLEECLKSPS  60
   61 LILSSDPAFR ILEDGTIYAT HDLLLSSEKR GFSILLSDSQ GQEQKKLEIV LSAREKKAFR 120
  121 KRHTKDPVRN RGKRKXFKIT SQRLDXDIDH DVFVLSPNCF FLLQIQSDFS QNYSIFYSIS 180
  181 GPGVDKEPFN LFYIEKDTGD IYCTRSIDRE EYDQFMVYGY ATTADGYAPE YPLPLLFKVE 240
  241 DDNDNAPYFE TKLTVFSVPE NCRYGEFTLK IHISLTCVDR DTETQRHREI LYSFAFSRVS 300
  301 QSEPHNTKPF HAGCAFTPLT AISLTSEPTV EREKCDTYKL VMEVRDMGGQ PFGLFTTGTI 360
  361 TISLEDENDN SPCFTQSSYF AEVDENRIDV EILRMMVQDQ DLPNTPHSKA VYKILQGNEN 420
  421 GNFKITTDPN TNEGVLCVVK PLNYEVSRQV TLQISVLNEA QFTNAANTQP PTMCTATVTV 480
  481 KIKDRDEGPE CLPPVKVIQS KDGLPAGQQL LGYKAMDPET SSGEGLRYKM VGDEDNWFEI 540
  541 NESTGDLRTV KVLDRESKFV KNNQYNISVV AMDSVGRSCT GTLVVLLEDF NDHPPQIDKD 600
  601 ITICQQEKDY AVLEPVDLDG PDNGPPFQFL LDNSSSKLWT LESQDGKRAI LRQRHNLNYN 660
  661 YYSVPIQIQD RHGFSAKHVL SVRVCDCTIP SECRMAIEER DVKPNVILGK WAILAMVLGS 720
  721 ALLLCILFTC FCVTTTKRTV KKCFPDDVAQ QNLIVSNTEG PGEEVTEANI RLPTQTVNIC 780
  781 DTSTSVGTLG GQGIKTQQNF EMVKGGYTLE SNKGGVLGAA DTGRYAYTDW QTFTQPRLGE 840
  841 KVYLCGQAEE HKHCDDYVRS YNYEGKGSMA GSVGCCSDRQ EEEGLEFLDH LEPKFRTLAK 900
  901 TCVKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle