YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109509492, gi...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKERSKRK EMTEKPCRGG SSHDSQPRQS SPAANQNCPC TSRGGAAEGG GRWRQGLGEV  60
   61 LAVARGSGAG GGGTRSDGPR RPLGRIKPRR AAGEGRREET VPERHRSMTG LYELVWRVLH 120
  121 LLFCLYRTLT SWLRVRFGTW NWIWRRCCRA ASAAVLAPLG FTLRKLPAVG RNRRHHRHPH 180
  181 RGPGPAATHP RLRWRADGRS LQKLPVHMGL VITEEVQEPS FSDIASLVVW CMAVGISYIS 240
  241 VYDHQGIFKR NNSRLMDEIL KQQQELLGQD CSKYSAEFAN SNDKDDQVLN CPSAVKVLSP 300
  301 EDGKADIVRA AQDFCQSVAQ QQRRPTELGV ELLDSLLSSH GFPDPDLVLK FGPVDSTLGF 360
  361 LPWQIRLTEI ISLPSHSNIS YEDLFSALRQ YAACEQRLGK

Type	Start	End	Confidence
Cytoplasmic	1	113	0.58
Transmembrane Helix	114	130	0.49
Non-Cytoplasmic	131	400	0.56