YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109509734
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDVVSAISP SLFLHLLLSH VSYPSDLCCL LSPLILSSAF PWPGLPDSVP HTSPPPYNAP  60
   61 QPPAEPPIPP PQTAPSSHHH HHHHYHQSGT ATLPRLGAGG LASAAAGAQR GPSSSATLPR 120
  121 PPHHAPPGPA AGAPPPGCAT LPRMPPDPYL QETRFEGPLP PPPPAAAAPP PPAPAPTAQA 180
  181 PGFVVPTHAG AVGTLPLGGY VAPGYPLQLQ PCTAYVPVYP VGTPYASGTP GGPGVTSTLP 240
  241 PPPQGPGLAL LEPRRPPHDY MPIAVLTTIC CFWPTGIIAI FKAVQVRTAL ARGDLVSAEI 300
  301 ASREARNFSF ISLAVGIAAM VLCTILTVVI IIAAQHHENY WDP

Type	Start	End	Confidence
Signal Peptide	1	24	0.40
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	259	0.83
Transmembrane Helix	260	283	0.86
Cytoplasmic	284	309	0.90
Transmembrane Helix	310	334	0.92
Non-Cytoplasmic	335	343	0.91