YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109509723
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLIPSTLL LFLLVLLGTL DRTGYCAGSH WLQTFNTVIL EPGMTEPRLI QVSYVDSIQF  60
   61 QGFDSQAPNA SMQPRAAWIE QEPPEYWEKE TTQVVSLTLS KGRILRYIAN ENRHSRNDYR 120
  121 TLQEVFGCNL ANDGTFLRGN YRLTYYDYDY VTLNEDMISW RAEGEIAKRW LSIWETEGVG 180
  181 ESWMTYLRGT CSERLLRFLE LGKKTLLRSD APKTHLTHQV RPDGNVTLRC WALGFYPADI 240
  241 TLTWQRDGKN HTQDMELPDT RPAGDGTFQK WAAVMVPSGE EQRYTCHVHH EGLPSPPSPE 300
  301 PSTTIPIVAI LIGLIVVTLV IGTVVILRVW KK

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	304	0.99
Transmembrane Helix	305	327	0.94
Cytoplasmic	328	332	0.78