YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109505572, gi...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYALEVVFL WILVAFAPHN KPFVVQEALG TDRRFSVPGI EEAADRLMDS VDGLQCLTMT  60
   61 AENPPSGDLI PAPLVTCKLC LCEQSLDKMT ILQECQCIFC TPCLKQYMVL SIREGCGSPI 120
  121 TCPDMVCLNH GTLQEAEIAC LVPVDEFQLY QRLKFEREVH MDPLRTWCPV ADCQTVCHIT 180
  181 AGDPGQPVSV ECPSCHLKFC SCCKDAWHEE SSCRDSQSAM PEHGALFGTD ADSPIKQCPV 240
  241 CRIYIERNEG CAQMMCKNCK HTFCWYCLQN LDNDIFLRHY DKGPCRNKLG HSRASVMWNR 300
  301 TQVVGILVGL GVIALVTSPL LLLASPCIIC CVCKSCRGKK KKHDPSTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	302	0.77
Transmembrane Helix	303	333	0.74
Cytoplasmic	334	348	0.74