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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149044976, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.71
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGWVRPSR VPLCVRAVWT AAALLLWTPW TAGEVEDSEA IDTLGQLDGP DSPLPTLKGY  60
   61 FLNFLEPVNN ITIVQGQTAI LHCKVAGNPP PNVRWLKNDA PVVQEPRRVI IRKTEYGSRL 120
  121 RIQDLDTTDT GYYQCVATNG LKTITATGVL YVRLGPTHSP NHNFQDDDQE DGFCQPYRGI 180
  181 ACARFIGNRT IYVDSLQMQG EIENRITAAF TMIGTSTHLS DQCSQFAIPS FCHFVFPLCD 240
  241 ARSRAPKPRE LCRDECEVLE NDLCRQEYTI ARSNPLILMR LQLPKCEALP MPESPDAANC 300
  301 MRIGIPAERL GRYHQCYNGS GTDYRGMAST TKSGHQCQPW ALQHPHSHRL SSTEFPELGG 360
  361 GHAYCRNPGG QMEGPWCFTQ NKNVRVELCD VPPCSPRDGS KMGILYILVP SIAIPLVIAC 420
  421 LFFLVCMCRN KQKASASTPQ RRQLMASPSQ DMEMPLISQH KQAKLKEISL STVRFMEELG 480
  481 EDRFGKVYKG HLFGPAPGEP TQVVAIKTLK DKAEGPLREE FRQEAMLRAR LQHPNIVCLL 540
  541 GVVTKDQPLS MVFSYCCHGD LHEFLVMRSP HSDVGSTDDD RTVKSALEPP DFVHVVAQIA 600
  601 AGMEFLSSHH VVHKDLATRN VLVYDKLNVR ISDLGLFREV YSADYYKLMG NSLLPIRWMS 660
  661 PEAVMYGKFS IDSDIWSYGV VLWEVFSYGL QPYCGYSNQD VVEMIRSRQV LPCPDDCPAW 720
  721 VYALMIECWN EFPSGRPRFK DIHGRLRSWG NLSNYNSSAQ TSGASNTTQT SSLSTSPVSN 780
  781 VSNARYMAPK QKAQPFPQPQ FIPMKGQIRP LVPPAQLYIP VNGYQPVPAY GAYLPNFYPV 840
  841 QIPMQMAPQQ VPPQMVPKPS SHHSGSGSTS TGYVTTAPSN TSVADRAALL SEGTEDVQNM 900
  901 PEDVAQSPVQ EAEEEEEGSV PETELLGDSD TLQVNEAHVH LEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle