YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109508431
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLPALPGK SNGPVSCRLT TLTGLPSLPT GPAHPRAGLR RARGDVSGEP EPLTAPLQPE  60
   61 ALAPARLTPG GPRVRDVAQY LLSDSLFVWV LVNTACCVLM LVAKLIQCIV FGPLRVSERQ 120
  121 HLKDKFWNFI FYKFIFIFGV LNVQTVEEVV MWCLWFAGLV FLHLMVQLCK DRFEYLSFSP 180
  181 TTPMSSHGRV LSLLIAMLLS CCGLAVVCCV TGYTHGMHTL AFMAAESLLV TVRTAHVILR 240
  241 YVIHLWDLNH EGTWEGKGTY VYYTDFVMEL MLLSLDLMHH IHMLLFGNIW LSMASLVIFM 300
  301 QLRYLFHEVQ RRIRRHKNYL RVVGNMEARF AVATAEELAV NNDDCAICWD SMQAARKLPC 360
  361 GHLFHNSCLR SWLEQDTSCP TCRMSLNIAD GSRAREDHQG ENLDENLVPV AAAEGRPRLN 420
  421 QHNHFFHFDG SRIASWLPSF SVEVMHTTNI LGITQASNSQ LNAMAHQIQE MFPQVPYHLV 480
  481 LQDLQMTRSV EITTDNILEG RIQVPFPVQR SDSLRPALNS PVERPGTDLE EGEASVQTER 540
  541 VPLDLSPRLE ETLDFSEVEL EPVEVEDFEA RGSRFSKSAD ERQRMLVQRK DDLLQQARKR 600
  601 FLNKSSEDDG ASERLLPSEG TSSDPVTLRR RMLAAAAERR LQRQQTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	85	0.76
Transmembrane Helix	86	108	0.83
Cytoplasmic	109	125	0.80
Transmembrane Helix	126	145	0.81
Non-Cytoplasmic	146	150	0.71
Transmembrane Helix	151	169	0.90
Cytoplasmic	170	189	0.87
Transmembrane Helix	190	214	0.91
Non-Cytoplasmic	215	283	0.48
Transmembrane Helix	284	306	0.88
Cytoplasmic	307	647	0.72